Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs2390781 chr4:126085764 A/C 4.34E-5 119 38.13 31.35 48 KM Plot
THYM rs2406663 chr9:97253245 A/G 7.08E-5 119 39.75 45.87 17.03 KM Plot
THYM rs2445642 chr1:26836878 G/C 0.00015 116 25.92 30.03 46.6 KM Plot
THYM rs2447581 chr11:67470731 T/G 5.9E-6 116 48.1 36.9 23.87 KM Plot
THYM rs2447585 chr11:67470547 G/T 2.52E-5 116 48.1 38.13 25 KM Plot
THYM rs2462562 chr2:30672329 A/G 5.86E-14 118 38.58 46.23 12.93 KM Plot
THYM rs2490427 chr1:161943070 T/C 2.34E-8 115 12.63 54.18 37.63 KM Plot
THYM rs2494393 chr1:26809666 T/A 0.000124 116 25.92 29.23 46.43 KM Plot
THYM rs2514020 chr11:67470038 G/A 2.52E-5 116 48.1 38.13 25 KM Plot
THYM rs2547040 chr16:24736408 G/C 3.14E-9 115 12.63 28 48 KM Plot
THYM rs2554385 chr15:84406587 A/G 0.000121 119 14.45 44.5 40.67 KM Plot
THYM rs2567985 chr12:121614534 A/G 2.06E-5 117 48 46.27 24.87 KM Plot
THYM rs2567986 chr12:121614352 A/G 2.06E-5 117 48 46.27 24.87 KM Plot
THYM rs2567988 chr12:121608273 C/T 1.87E-5 118 46.6 46.27 24.87 KM Plot
THYM rs2567989 chr12:121608908 G/A 1.87E-5 118 46.6 46.27 24.87 KM Plot